Director, Automation Engineering

Responsibilities

• Automation Strategy & Architecture
• Define and lead the automation strategy for sample preparation workflows
• Architect integrated systems leveraging liquid handling robotics and supporting instrumentation
• Drive innovative system design to achieve:
• Low cost per sample
• High sample success rates
• Operational robustness and uptime
• Design systems that scale from early-stage development to high-throughput production
• Workflow Development & Validation
• Translate assay requirements into automated workflows
• Lead the implementation, optimization, and validation of automated processes
• Establish performance metrics, QC strategies, and validation protocols
• Ensure workflows meet clinical, regulatory, and operational requirements as applicable
• Systems Integration
• Lead integration of automation platforms with LIMS and data systems
• Ensure seamless sample tracking, data integrity, and process traceability
• Collaborate with software and informatics teams to build scalable infrastructure
• Team Leadership
• Build and lead a high-performing team of automation engineers
• Set technical direction, prioritize projects, and mentor team members
• Foster a culture of innovation, accountability, and continuous improvement
• Cross-Functional Collaboration
• Partner closely with assay chemistry and R&D teams to co-develop automation-ready assays
• Collaborate with operations and quality teams to ensure successful deployment
• Serve as a key bridge between wet lab science and engineering

Requirements

• Required Experience
• PhD (10+ years), MS/MA (14+ years), or BS/BA (17+ years) in Engineering, Science or Technology
• 10+ years of demonstrated experience in lab automation, robotics, or related fields
• Deep expertise with liquid handling systems (e.g., Hamilton, Tecan, Beckman, etc.)
• Proven track record of designing and deploying automated sample prep workflows
• Experience integrating automation platforms with LIMS or similar systems
• Demonstrated success in scaling laboratory processes to high throughput.
• Leadership & Innovation
• Experience leading and managing small, high-impact engineering teams
• Strong history of cross-functional collaboration, especially with assay development teams
• Demonstrated ability to innovate at the system architecture level, improving throughput, reliability, and cost efficiency
• Technical Skills
• Workflow design, scripting, and automation control systems
• Process validation and performance optimization
• Understanding of workflows and molecular biology techniques
• Familiarity with data integration, APIs, and lab informatics systems
• Experience in clinical diagnostics or regulated environments (CLIA/CAP/FDA)
• Background in scaling to high sample throughput
• Experience with DOE (Design of Experiments) and process optimization
• Exposure to manufacturing or production-scale lab environments
• Why Join Us
• Influence the foundational technologies and strategies of a company poised to shape the future of clinical genomics and healthcare.
• Work in a dynamic, collaborative environment where innovation and scientific rigor are deeply valued.
• Join a seasoned and multidisciplinary team tackling high-impact problems at the intersection of science and engineering.
• Competitive compensation and equity package, comprehensive benefits, and flexibility to support work-life integration.
• We are an equal opportunity employer. We thrive on diversity and collaboration.

Benefits

Additional Information

Director, Automation Engineering Location: San Diego, CA Job Type: Full-Time Salary Range: $230,000 - $245,000 Position Overview We are seeking a Director of Automation to lead the design, development, and scaling of automated workflows for sample preparation. This role is critical to building a robust, scalable, and cost-efficient automation platform. You will own the end-to-end automation strategy from system architecture through implementation and validation working at the intersection of engineering, assay development, and laboratory.

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Company Intel

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